SMTL ID : 7mn7.1

PTP1B F225Y in complex with TCS401

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 1 residues within 4Å: Chain A: H.59 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.59

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: P.94, C.97, Q.128, M.138, F.140 1 PLIP interactions: 1 interactions with chain A Water bridges: A:C.97 GOL.3: 5 residues within 4Å: Chain A: S.151, E.152, D.153, V.160, Q.162 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.152 Water bridges: A:S.151 GOL.4: 4 residues within 4Å: Chain A: E.102, E.106, T.143, L.145 No protein-ligand interaction detected (PLIP) GOL.5: 5 residues within 4Å: Chain A: R.50, Y.51, S.123, L.124, K.125 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.50, A:S.123, A:K.125, A:S.221

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 5 residues within 4Å: Chain A: Y.25, R.29, R.259, G.264, Q.267 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: L.42, P.43, K.44 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: R.50, P.94, C.126, A.127 Ligand excluded by PLIP

1 x OTA: 2-(OXALYL-AMINO)-4,5,6,7-TETRAHYDRO-THIENO[2,3-C]PYRIDINE-3-CARBOXYLIC ACID(Non-covalent)

OTA.9: 13 residues within 4Å: Chain A: Y.51, D.53, V.54, K.125, D.186, F.187, C.220, S.221, A.222, I.224, G.225, R.226, Q.267 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.51, A:Y.51, A:F.187 Hydrogen bonds: A:Y.51, A:D.53, A:D.186, A:S.221, A:S.221, A:A.222, A:G.225, A:R.226 Water bridges: A:F.187 Salt bridges: A:K.125, A:R.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Torgeson, K.R. et al., Conserved conformational dynamics determine enzyme activity. Sci Adv (2022)

Release Date

2022-05-18

Peptides

Tyrosine-protein phosphatase non-receptor type 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein phosphatase non-receptor type 1

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