SMTL ID : 7mna.1

PTP1B 1-284 F225Y-R199N in complex with TCS401

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x OTA: 2-(OXALYL-AMINO)-4,5,6,7-TETRAHYDRO-THIENO[2,3-C]PYRIDINE-3-CARBOXYLIC ACID(Non-covalent)

OTA.1: 13 residues within 4Å: Chain A: Y.51, D.53, V.54, K.125, D.186, F.187, C.220, S.221, A.222, I.224, G.225, R.226, Q.267 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.51, A:F.187 Hydrogen bonds: A:Y.51, A:D.53, A:D.186, A:S.221, A:S.221, A:A.222, A:G.225, A:R.226 Water bridges: A:K.125, A:F.187 Salt bridges: A:K.125, A:R.226 pi-Stacking: A:Y.51

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: P.94, C.97, A.127, Q.128, M.138, F.140 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.94 Water bridges: A:G.98, A:G.98

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: L.42, P.43, K.44 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: R.117, V.118, H.180 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: R.29, R.259, G.264, Q.267 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: R.48, N.69, H.99 Ligand excluded by PLIP

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.7: 2 residues within 4Å: Chain A: H.59, K.78 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.78 Water bridges: A:H.59, A:H.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Torgeson, K.R. et al., Conserved conformational dynamics determine enzyme activity. Sci Adv (2022)

Release Date

2022-05-18

Peptides

Tyrosine-protein phosphatase non-receptor type 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein phosphatase non-receptor type 1

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