SMTL ID : 7mnb.1

PTP1B F225Y-R199N-L195R in complex with TCS401

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x OTA: 2-(OXALYL-AMINO)-4,5,6,7-TETRAHYDRO-THIENO[2,3-C]PYRIDINE-3-CARBOXYLIC ACID(Non-covalent)

OTA.1: 14 residues within 4Å: Chain A: Y.51, D.53, V.54, K.125, D.186, F.187, C.220, S.221, A.222, I.224, G.225, R.226, Q.267 Ligands: GOL.6 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.51, A:F.187 Hydrogen bonds: A:Y.51, A:D.53, A:D.186, A:S.221, A:S.221, A:A.222, A:I.224, A:G.225, A:R.226 Water bridges: A:K.125, A:F.187 Salt bridges: A:K.125, A:R.226 pi-Stacking: A:Y.51

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: R.50, P.94, L.124, C.126, A.127 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: P.94, C.97, Q.128, M.138, F.140 3 PLIP interactions: 3 interactions with chain A Water bridges: A:C.97, A:G.98, A:Q.128 GOL.4: 4 residues within 4Å: Chain A: D.241, K.244, F.285, I.286 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.241 GOL.5: 1 residues within 4Å: Chain A: H.59 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.59 GOL.6: 7 residues within 4Å: Chain A: D.53, V.54, I.224, M.263, G.264, Q.267 Ligands: OTA.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.53 Water bridges: A:R.259, A:R.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Torgeson, K.R. et al., Conserved conformational dynamics determine enzyme activity. Sci Adv (2022)

Release Date

2022-05-18

Peptides

Tyrosine-protein phosphatase non-receptor type 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein phosphatase non-receptor type 1