SMTL ID : 7mnq.1

Crystal Structure of the ZnF2 of Nucleoporin NUP358/RanBP2 in complex with Ran-GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 18 residues within 4Å: Chain A: D.38, G.39, G.40, T.41, G.42, K.43, T.44, T.45, K.91, N.142, K.143, D.145, I.146, S.170, A.171, K.172, V.207 Ligands: MG.2 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:G.40, A:T.41, A:T.41, A:G.42, A:K.43, A:T.44, A:T.45, A:T.45, A:E.90, A:N.142, A:K.143, A:K.143, A:S.170, A:S.170, A:A.171, A:K.172, A:K.172 Water bridges: A:K.43, A:K.43, A:K.91, A:D.145, A:D.145 Salt bridges: A:K.43, A:K.91, A:D.145

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: K.43, T.44 Ligands: GDP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.44, H2O.1, H2O.1, H2O.1, H2O.1

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 6 residues within 4Å: Chain B: C.20, I.22, C.23, C.34, A.36, C.37 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.20, B:C.23, B:C.34, B:C.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bley, C.J. et al., Architecture of the cytoplasmic face of the nuclear pore. Science (2022)

Release Date

2022-06-15

Peptides

GTP-binding nuclear protein Ran: A
E3 SUMO-protein ligase RanBP2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GTP-binding nuclear protein Ran

E3 SUMO-protein ligase RanBP2

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