SMTL ID : 7mnz.4 (5 other biounits)

Crystal Structure of Nup358/RanBP2 Ran-binding domain 4 in complex with Ran-GPPNHP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 27 residues within 4Å: Chain A: D.19, G.20, G.21, T.22, G.23, K.24, T.25, T.26, F.36, E.37, K.38, K.39, Y.40, V.41, A.42, T.43, A.68, G.69, Q.70, N.123, K.124, D.126, I.127, S.151, A.152, K.153 Ligands: MG.2 31 PLIP interactions: 31 interactions with chain A Hydrogen bonds: A:G.21, A:T.22, A:T.22, A:G.23, A:K.24, A:K.24, A:T.25, A:T.26, A:T.26, A:E.37, A:Y.40, A:Y.40, A:T.43, A:G.69, A:Q.70, A:N.123, A:K.124, A:K.124, A:S.151, A:A.152, A:K.153 Water bridges: A:T.25, A:T.25, A:K.38, A:V.41, A:V.41, A:T.43, A:D.66 Salt bridges: A:D.126 pi-Stacking: A:F.36, A:F.36

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.25, T.43, D.66 Ligands: GNP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.25, A:T.43, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bley, C.J. et al., Architecture of the cytoplasmic face of the nuclear pore. Science (2022)

Release Date

2022-06-15

Peptides

GTP-binding nuclear protein Ran: A
E3 SUMO-protein ligase RanBP2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

GTP-binding nuclear protein Ran

E3 SUMO-protein ligase RanBP2

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