SMTL ID : 7mo1.1

Crystal Structure of the ZnF1 of Nucleoporin NUP153 in complex with Ran-GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 19 residues within 4Å: Chain A: D.19, G.20, G.21, T.22, G.23, K.24, T.25, T.26, E.71, K.72, N.123, K.124, D.126, I.127, S.151, A.152, K.153, V.188 Ligands: MG.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:G.21, A:T.22, A:G.23, A:K.24, A:T.25, A:T.25, A:T.26, A:T.26, A:E.71, A:N.123, A:K.124, A:K.124, A:S.151, A:A.152, A:K.153, A:K.153 Water bridges: A:T.25, A:T.26 Salt bridges: A:K.24, A:D.126 pi-Cation interactions: A:K.153

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: K.24, T.25 Ligands: GDP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.25, H2O.1, H2O.2, H2O.4, H2O.4

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 7 residues within 4Å: Chain B: C.21, T.23, C.24, C.35, A.37, C.38, A.40 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.21, B:C.24, B:C.35, B:C.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bley, C.J. et al., Architecture of the cytoplasmic face of the nuclear pore. Science (2022)

Release Date

2022-06-15

Peptides

GTP-binding nuclear protein Ran: A
Nuclear pore complex protein Nup153: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GTP-binding nuclear protein Ran

Nuclear pore complex protein Nup153

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