- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x ZLY: (4-{(10R,11E,14S,18S)-18-(2-amino-2-oxoethyl)-14-[(naphthalen-1-yl)methyl]-8,17,20-trioxo-7,16,19-triazaspiro[5.14]icos-11-en-10-yl}phenyl)acetic acid(Non-covalent)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 2 residues within 4Å:- Chain A: W.64
- Ligands: ZLY.1
No protein-ligand interaction detected (PLIP)EDO.7: 3 residues within 4Å:- Chain B: P.9, R.10
- Chain C: P.2
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.10
EDO.8: 5 residues within 4Å:- Chain B: W.64, V.65, V.66, Y.77, H.78
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:W.64, B:V.65, B:V.66, B:H.78
EDO.9: 7 residues within 4Å:- Chain B: D.37, K.52, V.53, L.54, R.55
- Ligands: ZLY.6, EDO.10
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.37, B:R.55, B:R.55
- Water bridges: B:D.37
EDO.10: 4 residues within 4Å:- Chain B: R.55, F.62
- Ligands: ZLY.6, EDO.9
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.55
- Water bridges: B:R.55
EDO.12: 3 residues within 4Å:- Chain C: L.54, R.55
- Ligands: ZLY.11
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.55, C:R.55
EDO.13: 6 residues within 4Å:- Chain A: P.35
- Chain B: F.5, E.30
- Chain C: F.5, L.71, N.72
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:N.72, B:E.30
- Water bridges: C:N.72
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 4 residues within 4Å:- Chain A: S.70, N.72, E.73
- Chain C: K.60
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain A- Salt bridges: C:K.60
- Hydrogen bonds: A:S.70, A:N.72
SO4.4: 5 residues within 4Å:- Chain A: W.64, V.65, V.66, Y.77, H.78
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:W.64, A:V.65, A:V.66, A:Y.77
- Salt bridges: A:H.78
SO4.5: 5 residues within 4Å:- Chain A: R.29, S.31, E.32, S.33
- Chain B: S.70
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:E.32, A:S.33, B:S.70, B:S.70
- Salt bridges: A:R.29
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xiao, T. et al., Synthesis and structural characterization of a monocarboxylic inhibitor for GRB2 SH2 domain. Bioorg.Med.Chem.Lett. (2021)
- Release Date
- 2021-09-22
- Peptides
- Growth factor receptor-bound protein 2: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
FC
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x ZLY: (4-{(10R,11E,14S,18S)-18-(2-amino-2-oxoethyl)-14-[(naphthalen-1-yl)methyl]-8,17,20-trioxo-7,16,19-triazaspiro[5.14]icos-11-en-10-yl}phenyl)acetic acid(Non-covalent)
- 7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xiao, T. et al., Synthesis and structural characterization of a monocarboxylic inhibitor for GRB2 SH2 domain. Bioorg.Med.Chem.Lett. (2021)
- Release Date
- 2021-09-22
- Peptides
- Growth factor receptor-bound protein 2: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
FC
E