SMTL ID : 7msd.1

Structure of EED bound to EEDi-6068

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x ZMY: (9aP,12aR)-4-(2,2-difluoropropyl)-12-{[(5-fluoro-2,3-dihydro-1-benzofuran-4-yl)methyl]amino}-7-(trifluoromethyl)-4,5-dihydro-3H-2,4,8,11,12a-pentaazabenzo[4,5]cycloocta[1,2,3-cd]inden-3-one(Non-covalent)

ZMY.1: 13 residues within 4Å: Chain A: P.22, F.24, N.73, Y.75, N.121, K.138, L.167, D.237, W.291, Y.292, M.293, R.294, R.341 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.24, A:F.24, A:Y.292, A:Y.292, A:R.294 Hydrogen bonds: A:N.121, A:K.138 Water bridges: A:R.341 pi-Stacking: A:Y.75, A:Y.75, A:Y.292, A:Y.292, A:Y.292 pi-Cation interactions: A:R.294

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain A: S.83, L.89, K.111, I.147 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.83, A:S.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rej, R.K. et al., Discovery of EEDi-5273 as an Exceptionally Potent and Orally Efficacious EED Inhibitor Capable of Achieving Complete and Persistent Tumor Regression. J.Med.Chem. (2021)

Release Date

2021-10-20

Peptides

Polycomb protein EED: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polycomb protein EED

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