SMTL ID : 7mu0.1

MtbEttA in the ADP bound state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 11 residues within 4Å: Chain A: Y.331, R.334, L.336, N.356, G.357, V.358, G.359, K.360, T.361, T.362 Ligands: MG.4 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:R.334, A:R.334, A:G.357, A:G.357, A:V.358, A:G.359, A:K.360, A:T.361, A:T.361, A:T.361, A:T.362 Salt bridges: A:K.360 pi-Stacking: A:Y.331, A:Y.331 ADP.2: 12 residues within 4Å: Chain A: H.15, K.18, I.20, N.40, G.41, A.42, G.43, K.44, S.45, S.46, R.49 Ligands: MG.3 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:K.18, A:N.40, A:G.41, A:G.41, A:A.42, A:G.43, A:K.44, A:S.45, A:S.46, A:R.49 Salt bridges: A:K.44 pi-Stacking: A:H.15 ADP.5: 13 residues within 4Å: Chain B: H.15, K.18, I.20, P.39, N.40, G.41, A.42, G.43, K.44, S.45, S.46, R.49 Ligands: MG.8 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:N.40, B:G.41, B:A.42, B:G.43, B:K.44, B:S.45, B:S.46, B:R.49, B:R.49 Salt bridges: B:K.44 pi-Stacking: B:H.15 ADP.6: 11 residues within 4Å: Chain B: Y.331, R.334, L.336, N.356, G.357, V.358, G.359, K.360, T.361, T.362 Ligands: MG.7 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:R.334, B:G.357, B:G.357, B:V.358, B:G.359, B:K.360, B:T.361, B:T.362, B:T.362 Salt bridges: B:K.360 pi-Stacking: B:Y.331, B:Y.331

4 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: S.45, D.184, E.185 Ligands: ADP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.45 MG.4: 4 residues within 4Å: Chain A: T.361, Q.391, D.467 Ligands: ADP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.361 MG.7: 3 residues within 4Å: Chain B: T.361, Q.391 Ligands: ADP.6 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.361 MG.8: 2 residues within 4Å: Chain B: S.45 Ligands: ADP.5 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:S.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cui, Z. et al., Interplay between an ATP-binding cassette F protein and the ribosome from Mycobacterium tuberculosis. Nat Commun (2022)

Release Date

2022-02-02

Peptides

Energy-dependent translational throttle protein EttA: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Energy-dependent translational throttle protein EttA

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