SMTL ID : 7mu1.3 (4 other biounits)

Thermotoga maritima encapsulin shell

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-pentamer

Ligands

5 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 9 residues within 4Å: Chain A: W.87, D.90, R.94, K.239 Chain E: V.55, V.57, K.66, W.67, G.68 12 PLIP interactions: 9 interactions with chain A, 3 interactions with chain E Hydrophobic interactions: A:W.87, E:V.55, E:V.57, E:K.66 Hydrogen bonds: A:D.90, A:D.90, A:R.94, A:R.94 Salt bridges: A:K.239 pi-Stacking: A:W.87, A:W.87, A:W.87 FMN.2: 9 residues within 4Å: Chain A: V.55, V.57, K.66, W.67, G.68 Chain B: W.87, D.90, R.94, K.239 12 PLIP interactions: 3 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:V.55, A:V.57, A:K.66, B:W.87 Hydrogen bonds: B:D.90, B:D.90, B:R.94, B:R.94 Salt bridges: B:K.239 pi-Stacking: B:W.87, B:W.87, B:W.87 FMN.3: 9 residues within 4Å: Chain B: V.55, V.57, K.66, W.67, G.68 Chain C: W.87, D.90, R.94, K.239 12 PLIP interactions: 9 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: C:W.87, B:V.55, B:V.57, B:K.66 Hydrogen bonds: C:D.90, C:D.90, C:R.94, C:R.94 Salt bridges: C:K.239 pi-Stacking: C:W.87, C:W.87, C:W.87 FMN.4: 9 residues within 4Å: Chain C: V.55, V.57, K.66, W.67, G.68 Chain D: W.87, D.90, R.94, K.239 12 PLIP interactions: 3 interactions with chain C, 9 interactions with chain D Hydrophobic interactions: C:V.55, C:V.57, C:K.66, D:W.87 Hydrogen bonds: D:D.90, D:D.90, D:R.94, D:R.94 Salt bridges: D:K.239 pi-Stacking: D:W.87, D:W.87, D:W.87 FMN.5: 9 residues within 4Å: Chain D: V.55, V.57, K.66, W.67, G.68 Chain E: W.87, D.90, R.94, K.239 12 PLIP interactions: 3 interactions with chain D, 9 interactions with chain E Hydrophobic interactions: D:V.55, D:V.57, D:K.66, E:W.87 Hydrogen bonds: E:D.90, E:D.90, E:R.94, E:R.94 Salt bridges: E:K.239 pi-Stacking: E:W.87, E:W.87, E:W.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

LaFrance, B.J. et al., The encapsulin from Thermotoga maritima is a flavoprotein with a symmetry matched ferritin-like cargo protein. Sci Rep (2021)

Release Date

2021-11-24

Peptides

Maritimacin: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

Maritimacin

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