SMTL ID : 7mwn.1

An engineered PYL2-based WIN 55,212-2 synthetic cannabinoid sensor with a stabilized HAB1 variant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x WI5: {(3R)-5-methyl-3-[(morpholin-4-yl)methyl]-2,3-dihydro[1,4]oxazino[2,3,4-hi]indol-6-yl}(naphthalen-1-yl)methanone(Non-covalent)

WI5.1: 17 residues within 4Å: Chain A: Q.64, F.66, L.91, P.92, A.93, S.96, E.98, V.114, H.119, L.121, Y.124, I.166, V.169, N.173 Chain B: W.207, G.214, V.215 13 PLIP interactions: 11 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:L.91, A:P.92, A:A.93, A:H.119, A:L.121, A:I.166, A:V.169, A:V.169, B:W.207, B:V.215 Hydrogen bonds: A:N.173 Water bridges: A:R.120 Salt bridges: A:E.98

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 5 residues within 4Å: Chain A: Y.25, F.102, S.111, K.125, V.127 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.125

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: V.114, V.115, G.116, H.119, L.121, K.122, N.123, Y.124 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.123, A:Y.124, A:Y.124 Water bridges: A:H.119 GOL.4: 4 residues within 4Å: Chain A: P.46, A.47, S.48, E.132 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.47, A:S.48, A:S.48 Water bridges: A:R.108, A:E.132 GOL.7: 4 residues within 4Å: Chain B: E.247, R.270, L.274, R.327 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.270, B:R.270, B:R.327 Water bridges: B:Q.326

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 3 residues within 4Å: Chain B: D.65, D.254, D.314 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.65, B:D.254, B:D.314, H2O.5, H2O.5, H2O.5

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 3 residues within 4Å: Chain B: T.14, V.15, S.16 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.16, B:S.16

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 3 residues within 4Å: Chain B: I.268, R.271, R.272 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beltran, J. et al., Rapid biosensor development using plant hormone receptors as reprogrammable scaffolds. Nat.Biotechnol. (2022)

Release Date

2022-06-01

Peptides

Abscisic acid receptor PYL2: A
HAB1-T+: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Abscisic acid receptor PYL2

HAB1-T+