SMTL ID : 7mxy.1

Cryo-EM structure of PfFNT-inhibitor complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-pentamer

Ligands

5 x HV6: (Z)-4,4,5,5,5-pentakis(fluoranyl)-1-(4-methoxy-2-oxidanyl-phenyl)-3-oxidanyl-pent-2-en-1-one(Non-covalent)

HV6.1: 21 residues within 4Å: Chain A: Y.31, K.35, V.54, F.90, A.93, F.94, I.97, I.98, G.101, S.102, D.103, L.104, T.106, G.107, N.108, V.196, V.200, V.203, V.220, F.223, H.230 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.94, A:F.94, A:F.94, A:I.98, A:L.104 Hydrogen bonds: A:L.104, A:T.106, A:G.107, A:N.108, A:H.230 HV6.2: 17 residues within 4Å: Chain B: Y.31, V.54, F.90, A.93, F.94, I.97, I.98, D.103, L.104, T.106, G.107, N.108, V.196, V.200, V.203, V.220, H.230 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.94, B:F.94, B:F.94, B:I.97 Hydrogen bonds: B:L.104, B:L.104, B:T.106, B:G.107, B:H.230 HV6.3: 19 residues within 4Å: Chain C: Y.31, V.54, F.90, A.93, F.94, I.97, I.98, S.102, D.103, L.104, T.106, G.107, N.108, V.196, V.200, V.203, V.220, F.223, H.230 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:F.94, C:F.94, C:F.94, C:F.94, C:I.97, C:I.98, C:L.104, C:V.196 Hydrogen bonds: C:L.104, C:L.104, C:T.106, C:T.106, C:G.107, C:H.230 HV6.4: 19 residues within 4Å: Chain D: Y.31, K.35, V.54, F.90, A.93, F.94, I.97, I.98, S.102, D.103, L.104, T.106, G.107, N.108, V.196, V.200, V.220, F.223, H.230 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:F.94, D:F.94, D:F.94, D:I.97, D:I.97, D:L.104 Hydrogen bonds: D:L.104, D:L.104, D:T.106, D:G.107, D:N.108, D:H.230 HV6.5: 20 residues within 4Å: Chain E: Y.31, V.54, F.90, P.91, A.93, F.94, I.97, I.98, S.102, D.103, L.104, T.106, G.107, N.108, V.196, V.200, V.203, V.220, F.223, H.230 11 PLIP interactions: 11 interactions with chain E Hydrophobic interactions: E:F.94, E:F.94, E:I.97, E:L.104, E:V.200 Hydrogen bonds: E:Y.31, E:L.104, E:L.104, E:T.106, E:G.107, E:H.230

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lyu, M. et al., Structural basis of transport and inhibition of the Plasmodium falciparum transporter PfFNT. EMBO Rep (2021)

Release Date

2021-12-08

Peptides

Formate-nitrite transporter: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Membrane

We predict this structure to be a membrane protein.
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Formate-nitrite transporter

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