SMTL ID : 7myz.2 (1 other biounit)

Structure of the full length 5-TM receptor CD47 bound to Fab B6H12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.93 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.93, A:N.93 NAG.2: 5 residues within 4Å: Chain A: E.11, F.12, N.16, V.19, V.20 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.12 Hydrogen bonds: A:V.20 NAG.3: 4 residues within 4Å: Chain A: Q.31, N.32, L.74 Chain B: T.28 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:L.74 Hydrogen bonds: A:N.32, B:T.28, B:T.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fenalti, G. et al., Structure of the human marker of self 5-transmembrane receptor CD47. Nat Commun (2021)

Release Date

2021-09-08

Peptides

Fusion protein of Leukocyte surface antigen CD47 an Soluble cytochrome b562: A
B6H12 Fab heavy chain: B
B6H12 Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
I

C
M

Fusion protein of Leukocyte surface antigen CD47 an Soluble cytochrome b562

B6H12 Fab heavy chain

B6H12 Fab light chain

Related Entries With Identical Sequence