SMTL ID : 7n06.1

SARS-CoV-2 Nsp15 endoribonuclease post-cleavage state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x A- U- A: RNA (5'-R(*AP*UP*A)-3')(Non-covalent)

A-U-A.1: 12 residues within 4Å: Chain A: H.267, Q.277, G.279, G.280, H.282, K.322, W.365, E.372, T.373, Y.375 Chain C: H.47, D.49 Protein-ligand interaction information (PLIP) not available A-U-A.2: 12 residues within 4Å: Chain A: H.47, D.49 Chain B: H.267, Q.277, G.279, G.280, H.282, K.322, W.365, E.372, T.373, Y.375 Protein-ligand interaction information (PLIP) not available A-U-A.3: 12 residues within 4Å: Chain B: H.47, D.49 Chain C: H.267, Q.277, G.279, G.280, H.282, K.322, W.365, E.372, T.373, Y.375 Protein-ligand interaction information (PLIP) not available A-U-A.4: 9 residues within 4Å: Chain D: H.267, G.279, G.280, H.282, K.322, W.365, E.372, T.373, Y.375 Protein-ligand interaction information (PLIP) not available A-U-A.5: 9 residues within 4Å: Chain E: H.267, G.279, G.280, H.282, K.322, W.365, E.372, T.373, Y.375 Protein-ligand interaction information (PLIP) not available A-U-A.6: 10 residues within 4Å: Chain F: H.267, Q.277, G.279, G.280, H.282, K.322, W.365, E.372, T.373, Y.375 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frazier, M.N. et al., Characterization of SARS2 Nsp15 nuclease activity reveals it's mad about U. Nucleic Acids Res. (2021)

Release Date

2021-06-02

Peptides

Uridylate-specific endoribonuclease: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Uridylate-specific endoribonuclease