SMTL ID : 7n07.1

Crystal structure of the apo 3D6 antibody fragment

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: G.50, I.51, S.52, S.57, I.58, G.59 Chain B: Y.94 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.57, A:G.59, B:Y.94 Salt bridges: A:H.35 SO4.2: 3 residues within 4Å: Chain B: P.59, R.61, D.81 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.61 Salt bridges: B:R.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cook, J.D. et al., Conformational plasticity of the HIV-1 gp41 immunodominant region is recognized by multiple non-neutralizing antibodies. Commun Biol (2022)

Release Date

2022-03-30

Peptides

Fab 3D6 heavy chain: A
Fab 3D6 light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

Fab 3D6 heavy chain

Fab 3D6 light chain

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