SMTL ID : 7n0i.2 (3 other biounits)

Structure of the SARS-CoV-2 N protein C-terminal domain bound to single-domain antibody E2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-2-1-mer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: S.44, F.47, G.48 Chain B: V.2, W.33 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:W.33, A:F.47

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain B: A.37, Q.38, A.40 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:Q.38, B:A.40, H2O.6, H2O.6, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ye, Q. et al., Structural Basis for SARS-CoV-2 Nucleocapsid Protein Recognition by Single-Domain Antibodies. Front Immunol (2021)

Release Date

2021-06-09

Peptides

Nucleoprotein: AB
Single-domain antibody E2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
J

Nucleoprotein

Single-domain antibody E2

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