SMTL ID : 7n0r.2 (1 other biounit)

Structure of the SARS-CoV-2 N protein RNA-binding domain bound to single-domain antibody C2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

hetero-1-1-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: T.12, H.14 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.12, A:T.12 Water bridges: A:T.12, A:T.12 Salt bridges: A:H.14 SO4.2: 4 residues within 4Å: Chain A: G.51, G.52, D.53, K.57 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.52, A:D.53, A:D.53 Water bridges: A:G.51, A:G.51 Salt bridges: A:K.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ye, Q. et al., Structural Basis for SARS-CoV-2 Nucleocapsid Protein Recognition by Single-Domain Antibodies. Front Immunol (2021)

Release Date

2021-06-02

Peptides

Nucleoprotein: A
Single-domain antibody C2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Nucleoprotein

Single-domain antibody C2

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