SMTL ID : 7n0z.1

Structure of PPM1H phosphatase with manganese ions at the active site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-dimer

Ligands

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.123, D.374, D.435 Ligands: MN.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.123, A:D.374, A:D.435, H2O.2, H2O.3 MN.2: 3 residues within 4Å: Chain A: D.123, G.124 Ligands: MN.1 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.123, A:G.124, H2O.1, H2O.1, H2O.2 MN.3: 2 residues within 4Å: Chain A: D.225, D.374 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.225, A:D.374, H2O.2, H2O.4, H2O.4 MN.4: 4 residues within 4Å: Chain B: D.123, D.374, D.435 Ligands: MN.5 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.123, B:D.374, B:D.435, H2O.5, H2O.6, H2O.7 MN.5: 3 residues within 4Å: Chain B: D.123, G.124 Ligands: MN.4 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.123, B:G.124, H2O.5, H2O.5, H2O.5, H2O.8 MN.6: 2 residues within 4Å: Chain B: D.225, D.374 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.225, B:D.374, H2O.6, H2O.7, H2O.8

2 x MG: MAGNESIUM ION(Non-covalent)

MG.7: 1 residues within 4Å: Chain B: E.17 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.17, B:E.17, H2O.8, H2O.8, H2O.9 MG.8: 1 residues within 4Å: Chain B: H.446 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.446, H2O.5, H2O.8, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Waschbusch, D. et al., Structural basis for the specificity of PPM1H phosphatase for Rab GTPases. Embo Rep. (2021)

Release Date

2021-08-04

Peptides

Protein phosphatase 1H: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein phosphatase 1H

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