- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x PCG: CYCLIC GUANOSINE MONOPHOSPHATE(Non-covalent)
- 20 x CPL: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
CPL.2: 13 residues within 4Å:- Chain A: Y.139, D.152, L.153, P.156, C.177, Y.179, Y.202, F.205, L.208, W.209, F.212, L.364
- Ligands: CPL.7
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:Y.139, A:F.205, A:F.205, A:L.208, A:W.209, A:W.209, A:F.212
- Hydrogen bonds: A:Y.179
- Salt bridges: A:E.176
- pi-Cation interactions: A:Y.179
CPL.3: 5 residues within 4Å:- Chain A: I.335, W.338, I.392, F.396, L.399
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:I.335, A:W.338, A:F.396, A:L.399
CPL.4: 9 residues within 4Å:- Chain A: Y.137, I.138, Y.292, V.295, L.299, V.316, W.319, Y.320, I.323
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:Y.292, A:V.295, A:L.299, A:L.299, A:V.316, A:W.319, A:Y.320, A:I.323
CPL.5: 5 residues within 4Å:- Chain A: Y.320, I.323, I.324, W.327, L.331
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:Y.320, A:I.323, A:I.324, A:W.327, A:W.327, A:L.331
CPL.7: 11 residues within 4Å:- Chain A: A.146, L.153, V.322, H.326, T.361, T.363, L.364, L.365, Y.368
- Chain B: N.391
- Ligands: CPL.2
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:A.146, A:L.153, A:V.322, A:L.365, A:Y.368, A:Y.368
- Hydrogen bonds: A:T.363, B:N.391
CPL.9: 13 residues within 4Å:- Chain B: Y.139, D.152, L.153, P.156, C.177, Y.179, Y.202, F.205, L.208, W.209, F.212, L.364
- Ligands: CPL.14
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:Y.139, B:F.205, B:F.205, B:L.208, B:W.209, B:W.209, B:F.212
- Hydrogen bonds: B:Y.179
- Salt bridges: B:E.176
- pi-Cation interactions: B:Y.179
CPL.10: 5 residues within 4Å:- Chain B: I.335, W.338, I.392, F.396, L.399
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:I.335, B:W.338, B:F.396, B:L.399
CPL.11: 9 residues within 4Å:- Chain B: Y.137, I.138, Y.292, V.295, L.299, V.316, W.319, Y.320, I.323
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:Y.292, B:V.295, B:L.299, B:L.299, B:V.316, B:W.319, B:Y.320, B:I.323
CPL.12: 5 residues within 4Å:- Chain B: Y.320, I.323, I.324, W.327, L.331
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:Y.320, B:I.323, B:I.324, B:W.327, B:W.327, B:L.331
CPL.14: 11 residues within 4Å:- Chain B: A.146, L.153, V.322, H.326, T.361, T.363, L.364, L.365, Y.368
- Chain C: N.391
- Ligands: CPL.9
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: B:A.146, B:L.153, B:V.322, B:L.365, B:Y.368, B:Y.368
- Hydrogen bonds: B:T.363, C:N.391
CPL.16: 13 residues within 4Å:- Chain C: Y.139, D.152, L.153, P.156, C.177, Y.179, Y.202, F.205, L.208, W.209, F.212, L.364
- Ligands: CPL.21
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:Y.139, C:F.205, C:F.205, C:L.208, C:W.209, C:W.209, C:F.212
- Hydrogen bonds: C:Y.179
- Salt bridges: C:E.176
- pi-Cation interactions: C:Y.179
CPL.17: 5 residues within 4Å:- Chain C: I.335, W.338, I.392, F.396, L.399
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:I.335, C:W.338, C:F.396, C:L.399
CPL.18: 9 residues within 4Å:- Chain C: Y.137, I.138, Y.292, V.295, L.299, V.316, W.319, Y.320, I.323
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:Y.292, C:V.295, C:L.299, C:L.299, C:V.316, C:W.319, C:Y.320, C:I.323
CPL.19: 5 residues within 4Å:- Chain C: Y.320, I.323, I.324, W.327, L.331
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:Y.320, C:I.323, C:I.324, C:W.327, C:W.327, C:L.331
CPL.21: 11 residues within 4Å:- Chain C: A.146, L.153, V.322, H.326, T.361, T.363, L.364, L.365, Y.368
- Chain D: N.391
- Ligands: CPL.16
8 PLIP interactions:7 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:A.146, C:L.153, C:V.322, C:L.365, C:Y.368, C:Y.368
- Hydrogen bonds: C:T.363, D:N.391
CPL.23: 13 residues within 4Å:- Chain D: Y.139, D.152, L.153, P.156, C.177, Y.179, Y.202, F.205, L.208, W.209, F.212, L.364
- Ligands: CPL.28
10 PLIP interactions:10 interactions with chain D- Hydrophobic interactions: D:Y.139, D:F.205, D:F.205, D:L.208, D:W.209, D:W.209, D:F.212
- Hydrogen bonds: D:Y.179
- Salt bridges: D:E.176
- pi-Cation interactions: D:Y.179
CPL.24: 5 residues within 4Å:- Chain D: I.335, W.338, I.392, F.396, L.399
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:I.335, D:W.338, D:F.396, D:L.399
CPL.25: 9 residues within 4Å:- Chain D: Y.137, I.138, Y.292, V.295, L.299, V.316, W.319, Y.320, I.323
8 PLIP interactions:8 interactions with chain D- Hydrophobic interactions: D:Y.292, D:V.295, D:L.299, D:L.299, D:V.316, D:W.319, D:Y.320, D:I.323
CPL.26: 5 residues within 4Å:- Chain D: Y.320, I.323, I.324, W.327, L.331
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:Y.320, D:I.323, D:I.324, D:W.327, D:W.327, D:L.331
CPL.28: 11 residues within 4Å:- Chain A: N.391
- Chain D: A.146, L.153, V.322, H.326, T.361, T.363, L.364, L.365, Y.368
- Ligands: CPL.23
8 PLIP interactions:7 interactions with chain D, 1 interactions with chain A- Hydrophobic interactions: D:A.146, D:L.153, D:V.322, D:L.365, D:Y.368, D:Y.368
- Hydrogen bonds: D:T.363, A:N.391
- 4 x PX2: 1,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE(Non-covalent)
PX2.6: 6 residues within 4Å:- Chain A: W.338, I.339, R.390, N.391, I.392
- Chain D: V.369
5 PLIP interactions:1 interactions with chain D, 4 interactions with chain A- Hydrophobic interactions: D:V.369, A:W.338, A:N.391, A:I.392
- Salt bridges: A:R.390
PX2.13: 6 residues within 4Å:- Chain A: V.369
- Chain B: W.338, I.339, R.390, N.391, I.392
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:W.338, B:N.391, B:I.392, A:V.369
- Salt bridges: B:R.390
PX2.20: 6 residues within 4Å:- Chain B: V.369
- Chain C: W.338, I.339, R.390, N.391, I.392
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:W.338, C:N.391, C:I.392, B:V.369
- Salt bridges: C:R.390
PX2.27: 6 residues within 4Å:- Chain C: V.369
- Chain D: W.338, I.339, R.390, N.391, I.392
5 PLIP interactions:1 interactions with chain C, 4 interactions with chain D- Hydrophobic interactions: C:V.369, D:W.338, D:N.391, D:I.392
- Salt bridges: D:R.390
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zheng, X. et al., Structural and functional characterization of an achromatopsia-associated mutation in a phototransduction channel. Commun Biol (2022)
- Release Date
- 2022-03-16
- Peptides
- Cyclic nucleotide-gated cation channel: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-tetramer
- Ligands
- 4 x PCG: CYCLIC GUANOSINE MONOPHOSPHATE(Non-covalent)
- 20 x CPL: 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
- 4 x PX2: 1,2-DILAUROYL-SN-GLYCERO-3-PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zheng, X. et al., Structural and functional characterization of an achromatopsia-associated mutation in a phototransduction channel. Commun Biol (2022)
- Release Date
- 2022-03-16
- Peptides
- Cyclic nucleotide-gated cation channel: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D - Membrane
-
We predict this structure to be a membrane protein.