SMTL ID : 7n2a.1

human PXR LBD bound to compound 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

monomer

Ligands

1 x 07F: 5-benzyl-2-(3-fluoro-2-hydroxyphenyl)-6-methyl-3-(2-phenylethyl)pyrimidin-4(3H)-one(Non-covalent)

07F.1: 14 residues within 4Å: Chain A: L.70, L.73, L.104, M.107, S.111, Q.149, F.152, W.163, Y.170, M.187, H.271, R.274, L.275, F.284 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.70, A:L.73, A:L.73, A:L.104, A:M.107, A:F.152, A:F.152, A:W.163, A:Y.170, A:Y.170, A:F.284 Hydrogen bonds: A:Q.149 Halogen bonds: A:H.271

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramanjulu, J.M. et al., Overcoming the Pregnane X Receptor Liability: Rational Design to Eliminate PXR-Mediated CYP Induction. Acs Med.Chem.Lett. (2021)

Release Date

2021-08-25

Peptides

Isoform 1C of Nuclear receptor subfamily 1 group I member 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform 1C of Nuclear receptor subfamily 1 group I member 2

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