SMTL ID : 7n3i.1

Crystal structure of the SARS-CoV-2 receptor binding domain in complex with the human neutralizing antibody Fab fragment C098

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: F.11, G.12, F.15, N.16, L.41, S.44 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.15, A:L.41 Hydrogen bonds: A:N.16 Water bridges: A:N.16, A:S.44, A:S.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muecksch, F. et al., Affinity maturation of SARS-CoV-2 neutralizing antibodies confers potency, breadth, and resilience to viral escape mutations. Immunity (2021)

Release Date

2021-08-04

Peptides

Spike protein S1: A
C098 Fab heavy chain: B
C098 Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
H

C
L

Spike protein S1

C098 Fab heavy chain

C098 Fab light chain

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