SMTL ID : 7n3z.1

Crystal Structure of Saccharomyces cerevisiae Apn2 Catalytic Domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: N.25, E.59, K.61 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.59, H2O.1, H2O.1, H2O.5, H2O.5

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: V.225, C.226, H.271, R.272 Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: M.247, Q.301, R.305 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williams, J.S. et al., Molecular basis for processing of topoisomerase 1-triggered DNA damage by Apn2/APE2. Cell Rep (2022)

Release Date

2022-09-28

Peptides

DNA-(apurinic or apyrimidinic site) endonuclease 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA-(apurinic or apyrimidinic site) endonuclease 2