SMTL ID : 7n6c.1

Crystal structure of R22A human Galectin-7 mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: N.35, L.37, E.41, Q.42, G.43, S.44, A.46, K.64, W.69, E.122 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.41, A:G.43, A:S.44, A:S.44, A:K.64 Water bridges: A:N.35 GOL.8: 7 residues within 4Å: Chain B: H.49, N.51, R.53, V.60, N.62, W.69, E.72 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.49, B:R.53, B:N.62, B:E.72, B:E.72 GOL.9: 10 residues within 4Å: Chain B: N.2, V.3, P.4, H.5, V.123, G.124, G.125, V.127, Q.128, L.129 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.125, B:G.125, B:V.127, B:L.129

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 2 residues within 4Å: Chain A: L.24, P.85 No protein-ligand interaction detected (PLIP)

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: C.38, R.117, R.119 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.117 EDO.5: 4 residues within 4Å: Chain A: S.7, S.8, L.9, I.134 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.8 Water bridges: A:I.134 EDO.6: 5 residues within 4Å: Chain A: P.79, V.101, G.102 Ligands: PEG.4, EDO.7 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.102 EDO.7: 7 residues within 4Å: Chain A: P.79, F.80, Q.81, Q.84, P.85, F.86 Ligands: EDO.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.85 EDO.10: 2 residues within 4Å: Chain B: N.28, R.82 No protein-ligand interaction detected (PLIP)

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 5 residues within 4Å: Chain A: S.57, V.78, P.79, F.80 Ligands: EDO.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.57, A:V.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pham, N.T.H. et al., Crystal structure of R20A human Galectin-7 mutant. To Be Published

Release Date

2023-01-25

Peptides

Galectin-7: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Galectin-7

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