SMTL ID : 7n6v.1

Crystal structure of HIV-1 Protease multiple mutants PRS17 with Revertant mutation V48G bound to inhibitor Amprenavir

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

homo-dimer

Ligands

1 x 478: {3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YL ESTER(Non-covalent)

478.1: 22 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50, I.84 Chain B: L.23, D.25, G.27, A.28, D.30, V.32, G.48, G.49, I.50, P.81, S.82, I.84 23 PLIP interactions: 11 interactions with chain B, 12 interactions with chain A Hydrophobic interactions: B:L.23, B:A.28, B:V.32, B:I.50, B:P.81, B:I.84, A:V.32, A:I.50, A:I.84 Hydrogen bonds: B:D.29, B:D.30, B:D.30, B:I.50, A:G.27, A:G.27, A:G.27, A:D.29, A:D.30, A:D.30 Salt bridges: B:D.25, A:D.25 Water bridges: A:I.50, A:I.50

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: K.14, I.15, G.16, G.17, P.63, I.64, E.65, K.70 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.17, A:K.70 Water bridges: A:G.16 GOL.3: 8 residues within 4Å: Chain B: K.14, I.15, G.16, G.17, P.63, I.64, E.65, K.70 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.17 Water bridges: B:G.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burnaman, S.H. et al., Revertant mutation V48G alters conformational dynamics of highly drug resistant HIV protease PRS17. J.Mol.Graph.Model. (2021)

Release Date

2021-09-08

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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