SMTL ID : 7n70.1

Cryo-EM structure of ATP13A2 in the BeF-bound E2P-like state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Covalent)

BEF.1: 10 residues within 4Å: Chain A: S.338, G.342, D.508, K.509, T.510, T.745, G.746, K.854, N.876 Ligands: MG.2 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: S.338, D.508, T.510, D.873, G.874 Ligands: BEF.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.508, A:T.510, A:D.873

1 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.3: 12 residues within 4Å: Chain A: I.261, Y.478, L.956, L.959, L.963, V.964, T.967, T.968, V.971, L.972, R.975 Ligands: LMT.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.963, A:L.963, A:T.967, A:T.968, A:L.972 Salt bridges: A:R.975

1 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.4: 11 residues within 4Å: Chain A: I.261, I.264, S.265, L.268, K.272, V.474, L.477, Y.478, S.481, V.971 Ligands: Y01.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.268, A:Y.478

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sim, S.I. et al., Structural basis of polyamine transport by human ATP13A2 (PARK9). Mol.Cell (2021)

Release Date

2021-11-10

Peptides

Isoform 3 of Polyamine-transporting ATPase 13A2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Isoform 3 of Polyamine-transporting ATPase 13A2

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