SMTL ID : 7n77.1

Cryo-EM structure of ATP13A2 D458N/D962N mutant in the AlF-bound E1P-like state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)

ALF.1: 9 residues within 4Å: Chain A: D.508, K.509, T.510, T.745, G.746, K.854, N.876, D.877 Ligands: MG.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.508, A:D.508

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: D.508, T.510, D.873, G.874, D.877 Ligands: ALF.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.508, A:T.510, A:D.873

2 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.3: 13 residues within 4Å: Chain A: I.264, L.268, Y.271, V.474, L.477, Y.478, S.481, L.963, V.964, T.968, V.971, L.972 Ligands: Y01.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.264, A:L.268, A:V.474, A:Y.478 Hydrogen bonds: A:S.481 Salt bridges: A:R.484 Y01.4: 11 residues within 4Å: Chain A: V.964, T.968, L.972, P.1075, V.1078, A.1079, L.1082, L.1083, V.1086, L.1097 Ligands: Y01.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.968, A:L.972, A:L.1082

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sim, S.I. et al., Structural basis of polyamine transport by human ATP13A2 (PARK9). Mol.Cell (2021)

Release Date

2021-11-10

Peptides

Isoform 3 of Polyamine-transporting ATPase 13A2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Isoform 3 of Polyamine-transporting ATPase 13A2

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