SMTL ID : 7n88.1

The cryoEM structure of LbpB from N. gonorrhoeae in complex with lactoferrin

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain B: D.395, Y.435, Y.528, H.597 Ligands: BCT.3 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.395, B:D.395, B:Y.435, B:Y.528, B:H.597 FE.2: 5 residues within 4Å: Chain B: D.60, Y.92, Y.192, H.253 Ligands: BCT.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.60, B:Y.92, B:Y.192, B:H.253

2 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.3: 9 residues within 4Å: Chain B: D.395, Y.435, T.461, A.462, R.465, A.467, Y.528, H.597 Ligands: FE.1 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.465 BCT.4: 9 residues within 4Å: Chain B: D.60, Y.92, R.121, T.122, A.123, G.124, Y.192, H.253 Ligands: FE.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yadav, R. et al., Structural insight into the dual function of LbpB in mediating Neisserial pathogenesis. Elife (2021)

Release Date

2021-12-01

Peptides

Lactoferrin-binding protein B: A
Lactotransferrin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lactoferrin-binding protein B

Lactotransferrin

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