SMTL ID : 7na3.1

HDM2 in complex with compound 62

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

monomer

Ligands

1 x 1I3: 3-[4-(5-chloropyridin-3-yl)-2-[(2S)-1-methoxypropan-2-yl]-3-{(1R)-1-[(1r,4R)-4-methylcyclohexyl]ethyl}-3H-imidazo[4,5-c]pyridin-6-yl]-1,2,4-oxadiazol-5(4H)-one(Non-covalent)

1I3.1: 13 residues within 4Å: Chain A: L.39, L.42, G.43, I.46, M.47, Y.52, F.71, F.76, V.78, K.79, H.81, I.84, Y.85 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.39, A:L.42, A:I.46, A:F.71, A:F.76, A:V.78, A:V.78, A:I.84 Water bridges: A:H.81 pi-Stacking: A:H.81 Halogen bonds: A:H.81

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: P.5, A.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.6 SO4.3: 1 residues within 4Å: Chain A: M.47 No protein-ligand interaction detected (PLIP) SO4.4: 6 residues within 4Å: Chain A: C.62, S.63, G.68, D.69, V.73, P.74 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.62 SO4.5: 1 residues within 4Å: Chain A: H.58 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reutershan, M.H. et al., Discovery of MK-4688 : an Efficient Inhibitor of the HDM2-p53 Protein-Protein Interaction. J.Med.Chem. (2021)

Release Date

2021-11-10

Peptides

Isoform 11 of E3 ubiquitin-protein ligase Mdm2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform 11 of E3 ubiquitin-protein ligase Mdm2

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