SMTL ID : 7na4.1

HDM2 in complex with compound 63

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

1 x 1I9: 3-[4-(5-chloropyridin-3-yl)-2-[(R)-cyclopropyl(ethoxy)methyl]-3-{(1R)-1-[(1r,4R)-4-methylcyclohexyl]ethyl}-3H-imidazo[4,5-c]pyridin-6-yl]-1,2,4-oxadiazol-5(4H)-one(Non-covalent)

1I9.1: 14 residues within 4Å: Chain A: L.39, L.42, G.43, Q.44, I.46, M.47, Y.52, F.71, F.76, V.78, K.79, H.81, I.84, Y.85 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.39, A:L.42, A:I.46, A:Y.52, A:Y.52, A:F.71, A:F.76, A:V.78, A:I.84 Halogen bonds: A:H.81

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: G.1, K.79, E.80, H.81, R.82, K.83 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.1, A:G.1, A:E.80, A:H.81, A:R.82, A:K.83 GOL.3: 2 residues within 4Å: Chain A: P.5, A.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.6 Water bridges: A:S.7

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: Y.45, K.49, D.65, L.66 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Reutershan, M.H. et al., Discovery of MK-4688 : an Efficient Inhibitor of the HDM2-p53 Protein-Protein Interaction. J.Med.Chem. (2021)

Release Date

2021-11-10

Peptides

Isoform 11 of E3 ubiquitin-protein ligase Mdm2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform 11 of E3 ubiquitin-protein ligase Mdm2

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