SMTL ID : 7na9.1

Crystal structure of BoNT/B-LC-JSG-C1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

hetero-1-1-mer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: P.29, Y.55, T.56, F.57, F.166 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.56, A:T.56, A:F.57 Water bridges: A:P.29 EDO.2: 5 residues within 4Å: Chain A: L.109, K.112, S.356, G.360, F.361 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.356 EDO.4: 10 residues within 4Å: Chain A: T.177, I.178, D.179, F.186, R.189, K.248 Chain B: Y.113, A.114, D.117, K.120 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.179, A:D.179, A:K.248 Water bridges: A:E.176, A:R.189, A:R.189

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: H.235, H.239, E.273 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.235, A:H.239, A:E.273, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lam, K.H. et al., Probing the structure and function of the protease domain of botulinum neurotoxins using single-domain antibodies. Plos Pathog. (2022)

Release Date

2021-12-22

Peptides

Botulinum neurotoxin type B: A
JSG-C1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Botulinum neurotoxin type B

JSG-C1