SMTL ID : 7nam.1

LRP6_E1 in complex with Lr-EET-3.5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG- MAN- FUC- FUC: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-FUC-FUC.1: 9 residues within 4Å: Chain A: L.5, L.16, V.29, F.43, F.63, N.64, F.257, S.258, Q.259 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.16, A:F.43 NAG-NAG-MAN-FUC-FUC.2: 9 residues within 4Å: Chain A: W.87, L.88, E.90, N.264, A.265, T.266, N.267, G.270, I.271 No protein-ligand interaction detected (PLIP)

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 5 residues within 4Å: Chain A: L.83, A.84, I.126, A.127, H.255 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.126 Water bridges: A:L.83 NA.4: 4 residues within 4Å: Chain A: S.97, E.98, N.100, D.121 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.97, A:N.100, A:D.121

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hansen, S. et al., Directed evolution identifies high-affinity cystine-knot peptide agonists and antagonists of Wnt/ beta-catenin signaling. Proc.Natl.Acad.Sci.USA (2022)

Release Date

2022-06-29

Peptides

Low-density lipoprotein receptor-related protein 6: A
Trypsin inhibitor 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Low-density lipoprotein receptor-related protein 6

Trypsin inhibitor 2