SMTL ID : 7naz.1

TPR-rich domain of EccA3 from M. smegmatis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

5 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.1: 6 residues within 4Å: Chain A: I.201, D.229, L.232, A.233, Q.263, L.275 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.205, A:R.205 DIO.2: 3 residues within 4Å: Chain A: E.139, G.142, L.143 No protein-ligand interaction detected (PLIP) DIO.6: 4 residues within 4Å: Chain A: R.282, P.296, S.297, E.300 No protein-ligand interaction detected (PLIP) DIO.8: 1 residues within 4Å: Chain A: R.48 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.48 DIO.9: 4 residues within 4Å: Chain A: R.130, L.131, A.134, E.136 No protein-ligand interaction detected (PLIP)

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: M.20, V.21 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.20, A:M.20, A:V.21 SO4.4: 1 residues within 4Å: Chain A: R.130 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.130 Salt bridges: A:R.130 SO4.7: 3 residues within 4Å: Chain A: Q.161, R.176, L.177 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.161 Salt bridges: A:R.176 SO4.14: 6 residues within 4Å: Chain A: A.89, G.90, R.94, T.118, E.119, P.120 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.89, A:R.94 Water bridges: A:Q.93 SO4.15: 5 residues within 4Å: Chain A: G.135, E.136, F.137, G.138, W.290 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.137, A:G.138 Water bridges: A:G.135, A:E.136, A:E.136 SO4.16: 3 residues within 4Å: Chain A: R.151, G.153, W.154 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.153 Salt bridges: A:R.151

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: L.206, G.207, T.278, T.279 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.280 GOL.10: 2 residues within 4Å: Chain A: D.245, T.248 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.248, A:T.248 GOL.11: 5 residues within 4Å: Chain A: F.155, S.186, L.187, D.188, T.191 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.188, A:D.188, A:T.191 Water bridges: A:F.155 GOL.12: 4 residues within 4Å: Chain A: H.258, P.259, E.260, N.261 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.260, A:N.261, A:N.261 GOL.13: 3 residues within 4Å: Chain A: L.44, T.45, R.48 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.44, A:T.45, A:T.45, A:R.48, A:R.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crosskey, T.D. et al., Structure of TPR-rich domain of M. smegmatis EccA3. To Be Published

Release Date

2022-03-02

Peptides

ESX-3 secretion system protein EccA3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ESX-3 secretion system protein EccA3