SMTL ID : 7nbb.1 (1 other biounit)

Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with synthetic nanobody NbSL3

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.55 Å
Oligo State
hetero-1-2-1-mer
Ligands
4 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
1 x GOL: GLYCEROL(Non-functional Binders)
2 x CL: CHLORIDE ION(Non-functional Binders)
1 x NA: SODIUM ION(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Lange, S.M. et al., VCP/p97-associated proteins are binders and debranching enzymes of K48-K63-branched ubiquitin chains. Nat.Struct.Mol.Biol. (2024)
Release Date
2022-08-10
Peptides
Polyubiquitin-B: A
Polyubiquitin-B: BC
Synthetic nanobody NbSL3: D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D

Polyubiquitin-B

Polyubiquitin-B

Toggle Identical (BC)

Synthetic nanobody NbSL3

Related Entries With Identical Sequence

2msg.1 | 2o6v.1 | 2o6v.2 | 2o6v.3 | 3ons.1 | 3wxg.1 | 3wxg.2 | 5gvi.1 | 7nbb.2 | 7npo.1 | 8a67.1 | 8a67.2 | 8ftq.1