SMTL ID : 7ndj.1 (1 other biounit)

Crystal structure of ZC3H12C PIN-CCCH Zn Finger domain with RNA heptamer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: W.51, R.52, E.54, Q.55, A.60, I.62 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.52 EDO.2: 6 residues within 4Å: Chain A: L.4, R.39, H.41, D.158, L.161, R.162 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.39, A:H.41, A:R.162 EDO.3: 3 residues within 4Å: Chain A: P.145, P.146, D.147 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.147, A:D.147 Water bridges: A:P.145, A:D.148

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 6 residues within 4Å: Chain A: A.15, M.16, H.18, N.20, V.23, S.25 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.23, A:V.23, A:S.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garg, A. et al., PIN and CCCH Zn-finger domains coordinate RNA targeting in ZC3H12 family endoribonucleases. Nucleic Acids Res. (2021)

Release Date

2021-05-19

Peptides

Probable ribonuclease ZC3H12C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Probable ribonuclease ZC3H12C

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