SMTL ID : 7ndx.1

Crystal structure of the human HSP40 DNAJB1-CTDs in complex with a peptide of NudC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.54 Å

Oligo State

hetero-2-2-mer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: Y.100, P.101, A.102, R.103, I.104, V.115, N.116 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.103, A:R.103 EDO.2: 5 residues within 4Å: Chain A: R.123, T.124, I.125, P.126 Ligands: EDO.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.124 EDO.3: 4 residues within 4Å: Chain A: G.122, R.123, T.124 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.124 EDO.4: 2 residues within 4Å: Chain A: N.116, T.124 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.116, A:T.124, A:T.124 Water bridges: A:N.116 EDO.5: 7 residues within 4Å: Chain C: Y.100, P.101, A.102, R.103, I.104, V.115, N.116 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.103, C:R.103 EDO.6: 5 residues within 4Å: Chain C: R.123, T.124, I.125, P.126 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.124 EDO.7: 4 residues within 4Å: Chain C: G.122, R.123, T.124 Ligands: EDO.6 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.124 EDO.8: 2 residues within 4Å: Chain C: N.116, T.124 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.116, C:T.124, C:T.124 Water bridges: C:N.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Biebl, M.M. et al., NudC guides client transfer between the Hsp40/70 and Hsp90 chaperone systems. Mol.Cell (2022)

Release Date

2022-01-19

Peptides

DnaJ homolog subfamily B member 1: AC
Nuclear migration protein nudC: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

DnaJ homolog subfamily B member 1

Nuclear migration protein nudC