SMTL ID : 7ne2.1

Crystal structure of class I SFP aldolase YihT from Salmonella enterica with SFP/ DHAP (Schiff base complex with active site Lys193)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

2 x U8W: (2~{S},3~{S},4~{R})-2,3,4,5-tetrakis(oxidanyl)-6-phosphonooxy-hexane-1-sulfonic acid(Covalent)

U8W.1: 19 residues within 4Å: Chain A: A.40, D.42, Q.43, R.44, A.46, L.84, F.113, V.121, K.144, L.146, E.179, K.213, L.245, S.246, S.247, L.270, A.271, G.272, R.273 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:A.40, A:K.213 Hydrogen bonds: A:D.42, A:Q.43, A:R.44, A:K.144, A:S.246, A:S.247, A:S.247, A:L.270, A:G.272, A:R.273, A:R.273, A:R.273 Salt bridges: A:K.213, A:R.273, A:R.273 U8W.3: 19 residues within 4Å: Chain C: A.40, D.42, Q.43, R.44, A.46, L.84, F.113, V.121, K.144, L.146, E.179, K.213, L.245, S.246, S.247, L.270, A.271, G.272, R.273 16 PLIP interactions: 16 interactions with chain C Hydrophobic interactions: C:A.40, C:K.213 Hydrogen bonds: C:D.42, C:Q.43, C:R.44, C:K.144, C:S.246, C:S.247, C:S.247, C:G.272, C:R.273, C:R.273 Water bridges: C:A.46 Salt bridges: C:K.213, C:R.273, C:R.273

2 x U8Z: [(~{E})-2,3-bis(oxidanyl)prop-1-enyl] dihydrogen phosphate(Covalent)

U8Z.2: 14 residues within 4Å: Chain B: A.40, D.42, Q.43, L.84, K.144, E.179, K.213, L.245, S.246, S.247, L.270, A.271, G.272, R.273 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:A.40, B:K.213 Hydrogen bonds: B:D.42, B:Q.43, B:K.213, B:S.246, B:S.246, B:S.246, B:S.247, B:G.272, B:R.273 Water bridges: B:K.144, B:S.247, B:S.247, B:R.273, B:R.273 Salt bridges: B:K.213, B:R.273 U8Z.4: 14 residues within 4Å: Chain D: A.40, D.42, Q.43, L.84, K.144, E.179, K.213, L.245, S.246, S.247, L.270, A.271, G.272, R.273 16 PLIP interactions: 16 interactions with chain D Hydrophobic interactions: D:A.40, D:K.213 Hydrogen bonds: D:D.42, D:Q.43, D:K.144, D:K.213, D:S.246, D:S.246, D:S.247, D:S.247, D:G.272, D:R.273 Water bridges: D:R.273, D:R.273 Salt bridges: D:K.213, D:R.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, M. et al., Molecular Basis of Sulfosugar Selectivity in Sulfoglycolysis. Acs Cent.Sci. (2021)

Release Date

2021-04-14

Peptides

Sulfofructosephosphate aldolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Sulfofructosephosphate aldolase

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