SMTL ID : 7net.1

Crystal structure of the v-Src SH3 domain W95R-I96T mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 4 residues within 4Å: Chain A: Y.10 Chain B: T.34, N.55, Y.56 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.10 PEG.2: 4 residues within 4Å: Chain A: V.7, A.8, K.24, G.25 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.24 PEG.4: 4 residues within 4Å: Chain A: T.34, N.55, Y.56 Chain B: Y.10 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.56 PEG.5: 4 residues within 4Å: Chain B: V.7, A.8, K.24, G.25 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.24

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 14 residues within 4Å: Chain A: Y.12, R.15, T.16, T.18, D.19, W.38, Y.51 Chain B: Y.12, R.15, T.16, T.18, D.19, W.38, Y.51 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:R.15, B:R.15, B:T.18, B:D.19, A:R.15, A:R.15, A:D.19 Water bridges: B:D.19

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 4 residues within 4Å: Chain A: T.16, E.17 Chain B: T.16, E.17 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.17, A:E.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Salinas-Garcia, M.C. et al., The impact of oncogenic mutations of the viral Src kinase on the structure and stability of the SH3 domain. Acta Crystallogr D Struct Biol (2021)

Release Date

2021-06-02

Peptides

v-Src SH3 domain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

v-Src SH3 domain