SMTL ID : 7nf7.1

Ovine rBAT ectodomain homodimer, asymmetric unit

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.333, T.335 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: Y.260, G.261, N.262, T.342 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 2 residues within 4Å: Chain B: N.333, T.335 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 4 residues within 4Å: Chain B: Y.260, G.261, N.262, T.342 No protein-ligand interaction detected (PLIP)

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: N.215, D.285, Y.319, L.320, E.322 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.285, A:Y.319, A:L.320, A:E.322 CA.10: 5 residues within 4Å: Chain B: N.215, D.285, Y.319, L.320, E.322 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.285, B:Y.319, B:L.320, B:E.322

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain A: N.514 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.514 NAG.5: 2 residues within 4Å: Chain A: E.246, N.247 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.247 NAG.6: 3 residues within 4Å: Chain A: Q.225, W.226, N.229 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Q.225 NAG.7: 1 residues within 4Å: Chain A: N.524 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.524 NAG.11: 1 residues within 4Å: Chain B: N.514 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.514 NAG.12: 2 residues within 4Å: Chain B: E.246, N.247 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.247 NAG.13: 3 residues within 4Å: Chain B: Q.225, W.226, N.229 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Q.225 NAG.14: 1 residues within 4Å: Chain B: N.524 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.524

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, Y. et al., Ca 2+ -mediated higher-order assembly of heterodimers in amino acid transport system b 0,+ biogenesis and cystinuria. Nat Commun (2022)

Release Date

2022-01-19

Peptides

neutral and basic amino acid transport protein rBAT: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

neutral and basic amino acid transport protein rBAT

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