SMTL ID : 7nft.1 (1 other biounit)

Fujian capbinding domain in complex with Nb8208

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.14 Å

Oligo State

hetero-1-1-mer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: F.93, G.94, G.95, H.200, L.203, R.204 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.94, A:G.95 Salt bridges: A:H.200, A:R.204 SO4.2: 6 residues within 4Å: Chain A: K.121, I.122, R.123, N.197, P.198, M.199 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.123, A:N.197, A:M.199 Salt bridges: A:R.123 SO4.3: 4 residues within 4Å: Chain A: N.187, V.189, N.190, R.191 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.187, A:R.191 Salt bridges: A:R.191 SO4.4: 4 residues within 4Å: Chain B: R.19, T.69, S.71, Q.82 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.71 Salt bridges: B:R.19 SO4.5: 5 residues within 4Å: Chain B: F.47, A.61, D.62, A.63, K.104 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.62 Salt bridges: B:K.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Keown, J.R. et al., Mapping inhibitory sites on the RNA polymerase of the 1918 pandemic influenza virus using nanobodies. Nat Commun (2022)

Release Date

2021-12-01

Peptides

Polymerase basic protein 2: A
Nb8208: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Polymerase basic protein 2

Nb8208

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