- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-6-1-mer
- Ligands
- 5 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)
AGS.1: 20 residues within 4Å:- Chain A: D.384, H.385, Y.386, M.388, P.418, P.419, G.420, V.421, G.422, K.423, T.424, S.425, E.485, Y.555, I.563, Y.567, V.603, R.604
- Chain B: R.546
- Ligands: MG.2
19 PLIP interactions:17 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:H.385, A:Y.386, A:Y.386, A:P.418, A:G.420, A:V.421, A:G.422, A:K.423, A:T.424, A:S.425, A:S.425, A:R.604, A:R.604, B:R.546, B:R.546
- Salt bridges: A:K.423, A:R.604, A:R.604
- pi-Cation interactions: A:H.385
AGS.3: 22 residues within 4Å:- Chain B: D.384, H.385, Y.386, M.388, P.418, P.419, G.420, V.421, G.422, K.423, T.424, S.425, E.485, Y.555, I.563, Y.567, L.568, V.603, R.604, Q.607
- Chain C: R.546
- Ligands: MG.4
14 PLIP interactions:12 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:Y.386, B:Y.386, B:G.420, B:V.421, B:G.422, B:K.423, B:T.424, B:T.424, B:S.425, B:S.425, C:R.546, C:R.546
- Salt bridges: B:K.423
- pi-Stacking: B:H.385
AGS.5: 19 residues within 4Å:- Chain C: D.384, H.385, Y.386, M.388, P.418, P.419, G.420, V.421, G.422, K.423, T.424, S.425, N.534, Y.555, I.563, Y.567, R.604
- Chain D: R.546
- Ligands: MG.6
15 PLIP interactions:14 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:Y.386, C:Y.386, C:G.420, C:V.421, C:G.422, C:K.423, C:T.424, C:T.424, C:S.425, C:S.425, C:Y.555, D:R.546
- Salt bridges: C:K.423
- pi-Cation interactions: C:H.385, C:H.385
AGS.8: 20 residues within 4Å:- Chain E: H.385, Y.386, M.388, P.418, P.419, G.420, V.421, G.422, K.423, T.424, S.425, Y.555, I.563, Y.567, L.568, Q.571, V.603, R.604, Q.607
- Ligands: MG.9
15 PLIP interactions:15 interactions with chain E- Hydrogen bonds: E:Y.386, E:Y.386, E:G.420, E:V.421, E:G.422, E:K.423, E:T.424, E:T.424, E:S.425, E:S.425, E:R.604
- Salt bridges: E:K.423
- pi-Stacking: E:Y.567
- pi-Cation interactions: E:H.385, E:H.385
AGS.10: 24 residues within 4Å:- Chain A: P.542, R.546
- Chain F: D.384, H.385, Y.386, M.388, P.418, P.419, G.420, V.421, G.422, K.423, T.424, S.425, E.485, Y.555, I.563, Y.567, L.568, Q.571, V.603, R.604, Q.607
- Ligands: MG.11
19 PLIP interactions:18 interactions with chain F, 1 interactions with chain A- Hydrogen bonds: F:H.385, F:Y.386, F:Y.386, F:G.420, F:V.421, F:G.422, F:K.423, F:T.424, F:S.425, F:S.425, F:E.485, F:Y.555, F:R.604, F:Q.607, A:R.546
- Salt bridges: F:K.423, F:R.604, F:R.604
- pi-Cation interactions: F:H.385
- 5 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain A: T.424, E.485, R.604
- Ligands: AGS.1
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:T.424
MG.4: 2 residues within 4Å:- Chain B: T.424
- Ligands: AGS.3
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:T.424
MG.6: 2 residues within 4Å:- Chain C: T.424
- Ligands: AGS.5
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:T.424
MG.9: 2 residues within 4Å:- Chain E: T.424
- Ligands: AGS.8
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:T.424
MG.11: 5 residues within 4Å:- Chain A: R.546
- Chain F: T.424, E.485, R.604
- Ligands: AGS.10
1 PLIP interactions:1 interactions with chain F- Metal complexes: F:T.424
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.7: 18 residues within 4Å:- Chain D: D.384, H.385, Y.386, M.388, P.419, G.420, V.421, G.422, K.423, T.424, S.425, I.563, Y.567, L.568, Q.571, V.603, R.604, Q.607
13 PLIP interactions:13 interactions with chain D- Hydrogen bonds: D:H.385, D:Y.386, D:Y.386, D:G.420, D:G.422, D:K.423, D:T.424, D:T.424, D:T.424, D:S.425, D:S.425, D:Q.571
- Salt bridges: D:K.423
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mohammed, I. et al., Catalytic cycling of human mitochondrial Lon protease. Structure (2022)
- Release Date
- 2021-04-07
- Peptides
- Lon protease homolog, mitochondrial: ABCDEF
substrate protein: G - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
G
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-6-1-mer
- Ligands
- 5 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mohammed, I. et al., Catalytic cycling of human mitochondrial Lon protease. Structure (2022)
- Release Date
- 2021-04-07
- Peptides
- Lon protease homolog, mitochondrial: ABCDEF
substrate protein: G - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
G