SMTL ID : 7ngi.1

Mycobacterium tuberculosis transcriptional regulator EthR with bound inhibitory compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.46, V.47, R.58 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.47, A:D.48 Salt bridges: A:R.58 SO4.3: 3 residues within 4Å: Chain B: S.46, V.47, R.58 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.47, B:D.48 Salt bridges: B:R.58

2 x U9T: ~{N}-[2-(2-fluorophenyl)ethyl]-4-methyl-piperidine-1-carboxamide(Non-covalent)

U9T.2: 15 residues within 4Å: Chain A: L.87, W.103, G.106, I.107, F.110, W.138, W.145, Y.148, T.149, N.176, N.179, E.180, L.183, F.184, W.207 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:W.103, A:W.103, A:I.107, A:F.110, A:W.138, A:W.145, A:Y.148, A:E.180, A:E.180, A:F.184, A:W.207 Hydrogen bonds: A:N.176, A:N.179 Halogen bonds: A:W.145 U9T.4: 15 residues within 4Å: Chain B: L.87, W.103, G.106, I.107, F.110, W.138, W.145, Y.148, T.149, N.176, N.179, E.180, L.183, F.184, W.207 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:W.103, B:W.103, B:I.107, B:F.110, B:W.138, B:W.145, B:Y.148, B:E.180, B:E.180, B:F.184, B:W.207 Hydrogen bonds: B:N.176, B:N.179 Halogen bonds: B:W.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tatum, N.J. et al., Systematic exploration of the hydrophobic capacity of the EthR binding site for lead compound optimization. To Be Published

Release Date

2022-02-23

Peptides

HTH-type transcriptional regulator EthR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

HTH-type transcriptional regulator EthR

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