SMTL ID : 7ngl.1

R-state of wild type human mitochondrial LONP1 protease bound to endogenous ADP

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: D.368, H.369, Y.370, M.372, G.404, V.405, G.406, K.407, T.408, S.409, Y.539, I.547, Y.551, L.552, V.587, R.588, Q.591 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Y.370, A:G.404, A:G.404, A:G.406, A:K.407, A:T.408, A:T.408, A:S.409, A:Y.539, A:Y.539 Salt bridges: A:K.407, A:K.407, A:R.588 ADP.2: 17 residues within 4Å: Chain B: D.368, H.369, Y.370, M.372, G.404, V.405, G.406, K.407, T.408, S.409, Y.539, I.547, Y.551, L.552, V.587, R.588, Q.591 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:Y.370, B:G.404, B:G.404, B:G.406, B:T.408, B:T.408, B:S.409, B:Y.539, B:Y.539 Salt bridges: B:K.407, B:R.588 pi-Cation interactions: B:H.369 ADP.3: 18 residues within 4Å: Chain C: D.368, H.369, Y.370, M.372, G.404, V.405, G.406, K.407, T.408, S.409, Y.539, I.547, Y.551, L.552, Q.555, V.587, R.588, Q.591 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:Y.370, C:G.404, C:G.404, C:G.406, C:K.407, C:T.408, C:T.408, C:S.409, C:Y.539, C:Y.539, C:Q.555, C:Q.555 Salt bridges: C:K.407, C:K.407, C:R.588 ADP.4: 19 residues within 4Å: Chain D: D.368, H.369, Y.370, M.372, G.404, V.405, G.406, K.407, T.408, S.409, R.412, R.424, Y.539, I.547, Y.551, L.552, V.587, R.588, Q.591 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:Y.370, D:G.404, D:G.406, D:K.407, D:T.408, D:T.408, D:S.409, D:Y.539, D:Y.539 Salt bridges: D:K.407, D:R.588 ADP.5: 16 residues within 4Å: Chain E: D.368, H.369, Y.370, M.372, G.404, V.405, G.406, K.407, T.408, S.409, Y.539, I.547, Y.551, L.552, V.587, R.588 13 PLIP interactions: 13 interactions with chain E Hydrogen bonds: E:Y.370, E:Y.370, E:G.404, E:G.406, E:K.407, E:T.408, E:T.408, E:S.409, E:S.409, E:Y.539, E:R.588 Salt bridges: E:K.407, E:K.407 ADP.6: 17 residues within 4Å: Chain F: D.368, H.369, Y.370, M.372, G.404, V.405, G.406, K.407, T.408, S.409, Y.539, I.547, Y.551, L.552, V.587, R.588, Q.591 15 PLIP interactions: 15 interactions with chain F Hydrogen bonds: F:Y.370, F:G.404, F:G.404, F:G.406, F:K.407, F:T.408, F:T.408, F:S.409, F:S.409, F:S.409, F:Y.539, F:Y.539 Salt bridges: F:K.407, F:K.407, F:R.588

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mohammed, I. et al., Catalytic cycling of human mitochondrial Lon protease. Structure (2022)

Release Date

2021-04-28

Peptides

Lon protease homolog, mitochondrial: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Lon protease homolog, mitochondrial

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