SMTL ID : 7nhg.1

Crystal structure of the human METTL3-METTL14 complex with compound ASI_M3M_041

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x UDQ: N-[[(3R)-3-Hydroxy-1-[6-(methylamino)pyrimidin-4-yl]piperidin-3-yl]methyl]-4-(piperidin-1-ylmethyl)benzamide(Non-covalent)

UDQ.1: 16 residues within 4Å: Chain A: C.42, D.43, I.44, R.45, D.61, L.75, W.97, E.147, S.177, H.178, K.179, F.200, R.202, G.214, N.215, Q.216 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.97, A:S.177, A:K.179 Hydrogen bonds: A:I.44, A:R.45, A:F.200, A:N.215, A:N.215, A:Q.216 Salt bridges: A:D.61, A:E.147 pi-Stacking: A:F.200

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 5 residues within 4Å: Chain A: E.104 Chain B: R.140, R.144, R.149, R.150 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:R.140, B:R.144, B:R.150 Hydrogen bonds: B:R.150 Salt bridges: B:R.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bedi, R.K. et al., Structure-Based Design of Inhibitors of the m6A-RNA Writer Enzyme METTL3. Acs Bio Med Chem Au (2023)

Release Date

2021-10-20

Peptides

N6-adenosine-methyltransferase catalytic subunit: A
N6-adenosine-methyltransferase non-catalytic subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N6-adenosine-methyltransferase catalytic subunit

N6-adenosine-methyltransferase non-catalytic subunit

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