SMTL ID : 7nhj.1

Crystal structure of the human METTL3-METTL14 complex with compound DHU_M3M_154

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

hetero-1-1-mer

Ligands

1 x UDW: (S)-3-(((6-(3-(hydroxymethyl)piperidin-1-yl)pyrimidin-4-yl)amino)methyl)benzenesulfonamide(Non-covalent)

UDW.1: 14 residues within 4Å: Chain A: C.42, D.43, I.44, R.45, P.63, G.73, T.74, L.75, F.200, G.201, R.202, G.214, N.215, Q.216 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.43, A:D.43, A:I.44, A:G.201, A:N.215, A:N.215, A:Q.216 pi-Stacking: A:F.200 pi-Cation interactions: A:R.45

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 6 residues within 4Å: Chain A: E.104 Chain B: R.140, L.143, R.144, R.149, R.150 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.143, B:R.144, B:R.150 Hydrogen bonds: B:R.150 Salt bridges: B:R.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bedi, R.K. et al., Structure-Based Design of Inhibitors of the m6A-RNA Writer Enzyme METTL3. Acs Bio Med Chem Au (2023)

Release Date

2021-10-20

Peptides

N6-adenosine-methyltransferase catalytic subunit: A
N6-adenosine-methyltransferase non-catalytic subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N6-adenosine-methyltransferase catalytic subunit

N6-adenosine-methyltransferase non-catalytic subunit

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