SMTL ID : 7nl8.1

Crystal structure of a shortened IpgC variant in complex with 3-methylbenzohydrazide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

homo-dimer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: D.95, Y.96, S.126 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: A.111, P.112, L.113, K.114 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain B: A.111, P.112, L.113, K.114 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: Q.77, F.78, Q.79, Q.80 Ligand excluded by PLIP

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: S.126, K.132 No protein-ligand interaction detected (PLIP)

1 x 45L: 3-methylbenzohydrazide(Non-covalent)

45L.4: 7 residues within 4Å: Chain A: A.86, T.102, Q.106, K.114, E.117, C.118, L.121 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.86, A:T.102, A:L.121 Hydrogen bonds: A:Q.106

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 4 residues within 4Å: Chain A: F.100, K.130, L.131, K.134 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.134 Water bridges: A:K.134

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.8: 4 residues within 4Å: Chain B: Y.39, F.51, G.67, A.70 1 PLIP interactions: 1 interactions with chain B pi-Cation interactions: B:Y.39 DMS.9: 5 residues within 4Å: Chain B: F.89, A.90, G.92, K.93, N.94 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.94

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.10: 5 residues within 4Å: Chain B: F.100, H.101, K.130, L.131, K.134 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gardonyi, M. et al., Crystal structure of a shortened IpgC variant in complex with 3-methylbenzohydrazide. To be published

Release Date

2022-03-02

Peptides

Chaperone protein IpgC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Chaperone protein IpgC

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