SMTL ID : 7nlc.1

Crystallographic structure of human Tsg101 UEV domain in complex with a HEV ORF3 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

hetero-1-1-mer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: P.93, T.98, I.99 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: T.94, S.95 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 9 residues within 4Å: Chain A: G.102, K.103, H.104, E.140 Ligands: NH4.5, NH4.6, NH4.7, NH4.8, NH4.35 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.103

50 x NH4: AMMONIUM ION(Non-functional Binders)

NH4.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP NH4.5: 12 residues within 4Å: Chain A: K.100, T.101, G.102, V.105, E.140, P.141, P.142 Ligands: SO4.3, NH4.6, NH4.7, NH4.8, NH4.35 Ligand excluded by PLIP NH4.6: 12 residues within 4Å: Chain A: H.104, V.105, V.136, F.137, E.140, P.141, P.142 Ligands: SO4.3, NH4.5, NH4.7, NH4.8, NH4.35 Ligand excluded by PLIP NH4.7: 10 residues within 4Å: Chain A: T.101, G.102, K.103, H.104, V.105 Ligands: SO4.3, NH4.5, NH4.6, NH4.8, NH4.35 Ligand excluded by PLIP NH4.8: 9 residues within 4Å: Chain A: K.103, H.104, V.136, E.140 Ligands: SO4.3, NH4.5, NH4.6, NH4.7, NH4.35 Ligand excluded by PLIP NH4.9: 8 residues within 4Å: Chain A: P.64, I.134, V.135, G.138, D.139 Ligands: NH4.10, NH4.13, NH4.37 Ligand excluded by PLIP NH4.10: 10 residues within 4Å: Chain A: P.64, Y.65, R.66, G.138, D.139 Ligands: NH4.9, NH4.11, NH4.12, NH4.13, NH4.37 Ligand excluded by PLIP NH4.11: 8 residues within 4Å: Chain A: P.64, Y.65, R.66, G.67, G.138 Ligands: NH4.10, NH4.12, NH4.13 Ligand excluded by PLIP NH4.12: 7 residues within 4Å: Chain A: Y.65, R.66, G.138, D.139 Ligands: NH4.10, NH4.11, NH4.13 Ligand excluded by PLIP NH4.13: 7 residues within 4Å: Chain A: G.138, D.139 Ligands: NH4.9, NH4.10, NH4.11, NH4.12, NH4.37 Ligand excluded by PLIP NH4.14: 7 residues within 4Å: Chain A: L.113, P.114, Y.115, V.132, V.136 Ligands: NH4.15, NH4.18 Ligand excluded by PLIP NH4.15: 6 residues within 4Å: Chain A: P.114, Y.115, V.132 Ligands: NH4.14, NH4.16, NH4.18 Ligand excluded by PLIP NH4.16: 6 residues within 4Å: Chain A: Y.115, E.118, Q.123, S.124 Ligands: NH4.15, NH4.17 Ligand excluded by PLIP NH4.17: 7 residues within 4Å: Chain A: P.114, Y.115, E.118, W.119, K.120, S.124 Ligands: NH4.16 Ligand excluded by PLIP NH4.18: 9 residues within 4Å: Chain A: H.104, L.113, P.114, Y.115, V.132, V.136 Ligands: NH4.14, NH4.15, NH4.47 Ligand excluded by PLIP NH4.19: 7 residues within 4Å: Chain A: P.87, I.88, C.89, K.110, I.111, L.116 Ligands: NH4.49 Ligand excluded by PLIP NH4.20: 6 residues within 4Å: Chain A: L.79, N.85, P.86, P.87, I.88 Ligands: NH4.21 Ligand excluded by PLIP NH4.21: 9 residues within 4Å: Chain A: W.77, L.78, L.79, Y.82, N.85, P.86, P.87, I.88 Ligands: NH4.20 Ligand excluded by PLIP NH4.22: 6 residues within 4Å: Chain A: F.46, R.52, L.54, L.79, D.80, T.81 Ligand excluded by PLIP NH4.23: 5 residues within 4Å: Chain A: F.90, D.106, N.108, K.110, Y.112 Ligand excluded by PLIP NH4.24: 4 residues within 4Å: Chain A: C.75, W.77, F.90, K.92 Ligand excluded by PLIP NH4.25: 9 residues within 4Å: Chain A: T.58, G.59, P.73, I.74, C.75, K.92 Ligands: NH4.26, NH4.27, NH4.36 Ligand excluded by PLIP NH4.26: 8 residues within 4Å: Chain A: P.73, K.92, P.93, T.94 Ligands: NH4.25, NH4.27, NH4.28, NH4.36 Ligand excluded by PLIP NH4.27: 8 residues within 4Å: Chain A: T.58, G.59, T.60, P.73 Chain B: P.3 Ligands: NH4.25, NH4.26, NH4.36 Ligand excluded by PLIP NH4.28: 5 residues within 4Å: Chain A: K.92, P.93 Ligands: NH4.26, NH4.32, NH4.36 Ligand excluded by PLIP NH4.29: 5 residues within 4Å: Chain A: S.145, R.146 Chain B: P.7 Ligands: NH4.31, NH4.51 Ligand excluded by PLIP NH4.30: 7 residues within 4Å: Chain A: M.97, T.98, F.144, S.145, R.146, P.147 Chain B: L.8 Ligand excluded by PLIP NH4.31: 5 residues within 4Å: Chain A: S.96, S.145, R.146 Ligands: NH4.29, NH4.51 Ligand excluded by PLIP NH4.32: 8 residues within 4Å: Chain A: F.90, V.91, K.92, P.93, I.99, N.108, G.109 Ligands: NH4.28 Ligand excluded by PLIP NH4.33: 8 residues within 4Å: Chain A: D.36, T.60, I.61, P.62, N.71, I.72 Chain B: T.1 Ligands: NH4.34 Ligand excluded by PLIP NH4.34: 9 residues within 4Å: Chain A: Y.34, K.35, D.36, L.37, T.60, I.61, P.62 Ligands: NH4.33, NH4.44 Ligand excluded by PLIP NH4.35: 10 residues within 4Å: Chain A: K.100, T.101, G.102, E.140, P.141 Ligands: SO4.3, NH4.5, NH4.6, NH4.7, NH4.8 Ligand excluded by PLIP NH4.36: 7 residues within 4Å: Chain A: T.58, P.73, K.92 Ligands: NH4.25, NH4.26, NH4.27, NH4.28 Ligand excluded by PLIP NH4.37: 9 residues within 4Å: Chain A: V.63, P.64, I.134, V.135, G.138, D.139 Ligands: NH4.9, NH4.10, NH4.13 Ligand excluded by PLIP NH4.38: 5 residues within 4Å: Chain A: Y.84, N.85, P.86, W.119, K.120 Ligand excluded by PLIP NH4.39: 5 residues within 4Å: Chain A: Y.65, R.66, N.68, Y.70 Chain B: P.6 Ligand excluded by PLIP NH4.40: 2 residues within 4Å: Chain A: D.48, G.49 Ligand excluded by PLIP NH4.41: 6 residues within 4Å: Chain A: E.26, N.29, V.30, D.125, L.126, L.127 Ligand excluded by PLIP NH4.42: 3 residues within 4Å: Chain A: P.64, T.69 Ligands: NH4.43 Ligand excluded by PLIP NH4.43: 4 residues within 4Å: Chain A: G.67, N.68, T.69 Ligands: NH4.42 Ligand excluded by PLIP NH4.44: 5 residues within 4Å: Chain A: L.33, Y.34, K.35, D.36 Ligands: NH4.34 Ligand excluded by PLIP NH4.45: 4 residues within 4Å: Chain A: M.13, P.39, V.40, L.41 Ligand excluded by PLIP NH4.46: 4 residues within 4Å: Chain A: Y.65, R.66, F.144 Ligands: NH4.53 Ligand excluded by PLIP NH4.47: 4 residues within 4Å: Chain A: K.103, H.104, P.114 Ligands: NH4.18 Ligand excluded by PLIP NH4.48: 6 residues within 4Å: Chain A: I.111, Y.112, L.113, L.116, H.117 Ligands: NH4.49 Ligand excluded by PLIP NH4.49: 7 residues within 4Å: Chain A: K.110, I.111, Y.112, L.113, L.116 Ligands: NH4.19, NH4.48 Ligand excluded by PLIP NH4.50: 6 residues within 4Å: Chain A: P.147 Chain B: P.7, L.8, P.9, P.10 Ligands: NH4.53 Ligand excluded by PLIP NH4.51: 7 residues within 4Å: Chain A: M.97, S.145 Chain B: P.3, S.4, A.5 Ligands: NH4.29, NH4.31 Ligand excluded by PLIP NH4.52: 2 residues within 4Å: Chain B: P.9, P.10 Ligand excluded by PLIP NH4.53: 5 residues within 4Å: Chain B: P.7, L.8, P.9 Ligands: NH4.46, NH4.50 Ligand excluded by PLIP

Links

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Citation

Moschidi, D. et al., Crystallographic structure of human Tsg101 UEV domain in complex with a HEV ORF3 peptide. To Be Published

Release Date

2022-03-02

Peptides

Tsg101 UEV domain: A
Protein ORF3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tsg101 UEV domain

Protein ORF3