SMTL ID : 7nll.1

SARS-CoV-2 Spike RBD (dimer) in complex with two Fu2 nanobodies

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.1: 1 residues within 4Å: Chain A: N.25 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.25 NAG.2: 1 residues within 4Å: Chain B: N.25 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hanke, L. et al., A bispecific monomeric nanobody induces spike trimer dimers and neutralizes SARS-CoV-2 in vivo. Nat Commun (2022)

Release Date

2022-02-02

Peptides

Spike protein S1: AB
Nanobody Fu2: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
A

D
C

Spike protein S1

Nanobody Fu2

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