SMTL ID : 7nmi.1

Transactivation domain of p53 in complex with S100P, using annexin A2 as crystallization chaperone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain B: C.306, S.307, R.308, R.352, V.395, L.432, C.435, I.436, K.439 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.352, B:K.439 Water bridges: B:K.439

9 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain B: S.20, E.23, G.24, S.25, T.28, E.33 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:S.20, B:E.23, B:T.28, B:E.33, H2O.3 CA.3: 5 residues within 4Å: Chain B: D.63, N.65, D.67, Q.69, E.74 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.63, B:D.67, B:Q.69, B:E.74, H2O.3 CA.4: 3 residues within 4Å: Chain B: G.223, V.224, E.226 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:G.223, B:E.226, B:E.226, H2O.9, H2O.9 CA.5: 3 residues within 4Å: Chain B: K.261, L.264, E.269 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:K.261, B:E.269, H2O.2, H2O.8, H2O.9 CA.6: 4 residues within 4Å: Chain B: M.291, G.293, G.295, D.335 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:M.291, B:G.293, B:G.295, B:D.335, H2O.8 CA.7: 2 residues within 4Å: Chain B: T.296, E.298 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:T.296, B:E.298, H2O.6, H2O.6 CA.8: 5 residues within 4Å: Chain B: G.375, R.378, K.379, G.380, E.420 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:G.375, B:R.378, B:G.380, B:E.420, H2O.7 CA.9: 4 residues within 4Å: Chain B: M.451, G.453, G.455, D.495 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:M.451, B:G.453, B:G.455, B:D.495, B:D.495 CA.10: 5 residues within 4Å: Chain B: D.166, N.168, D.170, Q.172, E.177 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.166, B:D.170, B:Q.172, B:E.177, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ecsedi, P. et al., Transactivation domain of p53 in complex with S100P using annexin A2 as a crystallization chaperone. To Be Published

Release Date

2022-03-02

Peptides

Cellular tumor antigen p53: A
S100P-ANXA2 chimera: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cellular tumor antigen p53

S100P-ANXA2 chimera