SMTL ID : 7nms.1

InlB392_T332E: T332E variant of Listeria monocytogenes InlB (internalin B) residues 36-392

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.109, K.112, H.132 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.112 Salt bridges: A:K.112, A:H.132 SO4.2: 2 residues within 4Å: Chain A: R.194, K.230 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.194, A:K.230 SO4.3: 3 residues within 4Å: Chain A: S.235, L.236, K.250 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.236 Water bridges: A:S.235, A:L.236 Salt bridges: A:K.250

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: N.218, K.290, V.292, K.307, V.308, E.309 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.218, A:K.290, A:K.307 Water bridges: A:N.218, A:E.309 GOL.5: 7 residues within 4Å: Chain A: L.205, E.206, L.207, F.208, K.278, A.279, R.280 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:L.205, A:L.207, A:F.208, A:K.278, A:R.280, A:R.280 Water bridges: A:K.278

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 4 residues within 4Å: Chain A: K.72, F.74, W.94, F.96 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Geerds, C. et al., A recurring packing contact in crystals of InlB pinpoints functional binding sites in the internalin domain and the B repeat. Acta Crystallogr D Struct Biol (2022)

Release Date

2022-01-26

Peptides

Internalin B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Internalin B

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