- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.17 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x 98W: dimethyl 5-oxidanylbenzene-1,3-dicarboxylate(Non-covalent)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 3 residues within 4Å:- Chain A: R.105, V.191
- Chain F: N.118
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain F- Hydrogen bonds: A:R.105, A:R.105, A:V.191, F:N.118
- Water bridges: A:V.191
EDO.6: 3 residues within 4Å:- Chain B: R.105, V.191
- Chain E: N.118
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain E- Hydrogen bonds: B:R.105, B:R.105, B:V.191, E:N.118
- Water bridges: B:V.191
EDO.10: 3 residues within 4Å:- Chain C: R.105, V.191
- Chain D: N.118
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:R.105, C:R.105, C:V.191, D:N.118
- Water bridges: C:V.191
EDO.14: 3 residues within 4Å:- Chain C: N.118
- Chain D: R.105, V.191
5 PLIP interactions:1 interactions with chain C, 4 interactions with chain D- Hydrogen bonds: C:N.118, D:R.105, D:R.105, D:V.191
- Water bridges: D:V.191
EDO.18: 3 residues within 4Å:- Chain B: N.118
- Chain E: R.105, V.191
5 PLIP interactions:4 interactions with chain E, 1 interactions with chain B- Hydrogen bonds: E:R.105, E:R.105, E:V.191, B:N.118
- Water bridges: E:V.191
EDO.22: 3 residues within 4Å:- Chain A: N.118
- Chain F: R.105, V.191
5 PLIP interactions:4 interactions with chain F, 1 interactions with chain A- Hydrogen bonds: F:R.105, F:R.105, F:V.191, A:N.118
- Water bridges: F:V.191
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 4 residues within 4Å:- Chain A: W.25, Q.28, K.211, K.293
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.28
- Salt bridges: A:K.211, A:H.270
SO4.4: 4 residues within 4Å:- Chain A: T.77, R.81, F.89, R.94
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.94
- Salt bridges: A:R.81
SO4.7: 4 residues within 4Å:- Chain B: W.25, Q.28, K.211, K.293
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.28
- Salt bridges: B:K.211, B:H.270
SO4.8: 4 residues within 4Å:- Chain B: T.77, R.81, F.89, R.94
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.94
- Salt bridges: B:R.81
SO4.11: 4 residues within 4Å:- Chain C: W.25, Q.28, K.211, K.293
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:Q.28
- Salt bridges: C:K.211, C:H.270
SO4.12: 4 residues within 4Å:- Chain C: T.77, R.81, F.89, R.94
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.94
- Salt bridges: C:R.81
SO4.15: 4 residues within 4Å:- Chain D: W.25, Q.28, K.211, K.293
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:Q.28
- Salt bridges: D:K.211, D:H.270
SO4.16: 4 residues within 4Å:- Chain D: T.77, R.81, F.89, R.94
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:R.94
- Salt bridges: D:R.81
SO4.19: 4 residues within 4Å:- Chain E: W.25, Q.28, K.211, K.293
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:Q.28
- Salt bridges: E:K.211, E:H.270
SO4.20: 4 residues within 4Å:- Chain E: T.77, R.81, F.89, R.94
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:R.94
- Salt bridges: E:R.81
SO4.23: 4 residues within 4Å:- Chain F: W.25, Q.28, K.211, K.293
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:Q.28
- Salt bridges: F:K.211, F:H.270
SO4.24: 4 residues within 4Å:- Chain F: T.77, R.81, F.89, R.94
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:R.94
- Salt bridges: F:R.81
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gupta, P. et al., A fragment-based approach to assess the ligandability of ArgB, ArgC, ArgD and ArgF in the L-arginine biosynthetic pathway of Mycobacterium tuberculosis. Comput Struct Biotechnol J (2021)
- Release Date
- 2021-06-30
- Peptides
- Acetylglutamate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.17 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x 98W: dimethyl 5-oxidanylbenzene-1,3-dicarboxylate(Non-covalent)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gupta, P. et al., A fragment-based approach to assess the ligandability of ArgB, ArgC, ArgD and ArgF in the L-arginine biosynthetic pathway of Mycobacterium tuberculosis. Comput Struct Biotechnol J (2021)
- Release Date
- 2021-06-30
- Peptides
- Acetylglutamate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A